Calculate Coverage From BAM File
Learn how to use samtools depth and coverage commands to calculate the coverage from BAM file
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Recent posts
Python: Why VIF Return Inf Value?
Learn resons behind the Inf Value in VIF analysis in Python with example
Find Max and Min Sequence Length in Fasta
Learn how to find the maximum and minimum sequence lengths in a FASTA file using Python, seqkit, and samtools
Get Non-overlapping Portion Between Two Regions in bedtools
Learn how to use bedtools subtract to get non-overlapping portion between two regions in BED files
What is Log2 Fold Change in Bioinformatics
Learn what is log2 fold change, how to calculate log2 fold change, and why log2 transformation used for measuring the fold change between samples in bioinfo...
Visualizing the 3D Genome with Python
Introduction to 3D Genomics
Unlocking the Genome’s Architecture - An Introduction to 3D Genomics
Introduction to 3D Genomics
Samtools: Extract Reads from Specific Genomic Regions
Learn how to extract reads from BAM files that fall within a specified region with samtools
Samtools: Extract Mapped and Unmapped Paired-end Reads
Learn how to filter mapped and unmapped paired-end reads with Samtools
Samtools: How to Filter Mapped and Unmapped Reads
Learn how to filter mapped and unmapped sequence reads with Samtools
What is Singleton in Bioinformatics?
This tutorial explains what is singleton in bioinformatics
How to Create Histogram Using NumPy
Learn how to Generate a histogram with NumPy