Detailed introduction of survival analysis and its calculations in R
Make discoveries with your data
Perform differential gene expression analysis of RNA-seq data using DESeq2
Generate a gene counts matrix when featureCounts run separately on individual aligned files
SAMtools for manipulation of BAM files
NCBI E-utilities for downloading the single or large number of sequences from the NCBI sequence database
VCF fields information
bulk and single-cell RNA-seq expression units, count normalization, formula, examples in Python, gene quantification, batch effects, and between-sample and w...
Downloading FASTQ files from NCBI SRA database
t-SNE using sklearn package. This article explains the basics of t-SNE, differences between t-SNE and PCA, example using scRNA-seq data, and results interpre...
Learn how to perform k-means clustering in Python. This article discusses the k-means clustering algorithm, it’s implementation in Python, and visualization ...
High-through sequencing coverage calculation and coverage recommendations
Visualize interactive heatmap using hvPlot and Bokeh