Posts by Category

Bioinformatics

How to Use bedtools intersect

4 minute read

Learn bedtools intersect for finding overlapping and non-overlapping intervals between BED files in various ways

Steps in PCR

3 minute read

Learn the step-by-step process of Polymerase Chain Reaction (PCR)

Heatmap in Python

3 minute read

Heatmap and hierarchical clustering visualization in Python

Volcano plot in Python

4 minute read

Volcano plot using bioinfokit package. This article explains the visualization of volcano plots for gene expression data

Concatenate and split VCF files

1 minute read

What is VCF file? VCF stands for variant call format It is a text file (file extension as .vcf) storing meta-information, marker and genotype data of ge...

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Statistics

Q-Q plot in Python

1 minute read

Learn how to create a Q-Q plot in Python to assess the normal distribution of the data

Shapiro–Wilk Test in R

2 minute read

Learn to perform the Shapiro-Wilk test for normality in R with step-by-step guidance and make sure the data meets the normality assumption for reliable stati...

Q-Q plot in R

2 minute read

Learn how to create a Q-Q plot in R to assess the normal distribution of the data

How to Calculate VIF in R

4 minute read

This article describes how to calculate the Variance Inflation Factor (VIF) to detect multicollinearity in R

Multiple linear regression (MLR)

8 minute read

Multiple regression analysis using statsmodels. Learn how to define regression model, assumptions, metrics evaluation, and interpretation

MANOVA using R (with examples and code)

10 minute read

A step-by-step article for performing MANOVA in R. This article describes the background of MANOVA, assumptions, hypotheses, and codes for performing MANOVA ...

Variable types

less than 1 minute read

Variable types Flowchart for types of variables used for collecting and analyzing the data

How to Calculate p Value by Hand

4 minute read

Learn how to calculate p-values by hand (using t test example) to gain a deeper understanding of statistical hypothesis testing.

ANCOVA code in Python

1 minute read

This article explains how to perform the one-way ANCOVA in Python. You can refer to this article to know more about ANCOVA, when to use ANCOVA, assumptions, ...

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Python

Q-Q plot in Python

1 minute read

Learn how to create a Q-Q plot in Python to assess the normal distribution of the data

Support Vector Machine (SVM) in Python

7 minute read

Implementation of Support vector machine (SVM) in Python for prediction of heart disease. Learn SVM basics, model fitting, model accuracy, and interpretation

How to subset from pandas DataFrame?

6 minute read

This article explains how to select rows, columns, and a subset of pandas DataFrame using various indexing operations and pandas functions

Python tuples

2 minute read

Python tuples initialization and operations

ANCOVA code in Python

1 minute read

This article explains how to perform the one-way ANCOVA in Python. You can refer to this article to know more about ANCOVA, when to use ANCOVA, assumptions, ...

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R

Shapiro–Wilk Test in R

2 minute read

Learn to perform the Shapiro-Wilk test for normality in R with step-by-step guidance and make sure the data meets the normality assumption for reliable stati...

Q-Q plot in R

2 minute read

Learn how to create a Q-Q plot in R to assess the normal distribution of the data

How to Calculate VIF in R

4 minute read

This article describes how to calculate the Variance Inflation Factor (VIF) to detect multicollinearity in R

MANOVA using R (with examples and code)

10 minute read

A step-by-step article for performing MANOVA in R. This article describes the background of MANOVA, assumptions, hypotheses, and codes for performing MANOVA ...

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Pandas

How to subset from pandas DataFrame?

6 minute read

This article explains how to select rows, columns, and a subset of pandas DataFrame using various indexing operations and pandas functions

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Machine learning

Support Vector Machine (SVM) in Python

7 minute read

Implementation of Support vector machine (SVM) in Python for prediction of heart disease. Learn SVM basics, model fitting, model accuracy, and interpretation

Multiple linear regression (MLR)

8 minute read

Multiple regression analysis using statsmodels. Learn how to define regression model, assumptions, metrics evaluation, and interpretation

Variable types

less than 1 minute read

Variable types Flowchart for types of variables used for collecting and analyzing the data

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Machine Learning

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Linear model

Multiple linear regression (MLR)

8 minute read

Multiple regression analysis using statsmodels. Learn how to define regression model, assumptions, metrics evaluation, and interpretation

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ML/AI

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Linux

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High-throughput sequence analysis

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Dimensionality reduction

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Molecular Biology

Steps in PCR

3 minute read

Learn the step-by-step process of Polymerase Chain Reaction (PCR)

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Multivariate analysis

MANOVA using R (with examples and code)

10 minute read

A step-by-step article for performing MANOVA in R. This article describes the background of MANOVA, assumptions, hypotheses, and codes for performing MANOVA ...

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Python String

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Genomic visualization

Volcano plot in Python

4 minute read

Volcano plot using bioinfokit package. This article explains the visualization of volcano plots for gene expression data

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Biostatistics

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Calculator

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pandas

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seaborn

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Genotyping

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Variant Annotation

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Variant analysis

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Clustering

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Biotechnology

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Bash

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