t-SNE in Python for visualization of high-dimensional data
t-SNE using sklearn package. This article explains the basics of t-SNE, differences between t-SNE and PCA, example using scRNA-seq data, and results interpre...
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K-means Clustering in Python: Detailed Guide With Example
This article how to perform and visualize the K-means Clustering in Python
Sequencing coverage and breadth of coverage
High-through sequencing coverage calculation and coverage recommendations
pheatmap: create annotated heatmaps in R (detailed guide)
How to create and customize heatmap using pheatmap package in R
Interactive Heatmap in Python (using hvPlot and Bokeh)
Visualize interactive heatmap using hvPlot and Bokeh
Heatmap in Python
Heatmap and hierarchical clustering visualization in Python
Principal component analysis (PCA) and visualization using Python (Detailed guide with example)
PCA using sklearn package. This article explains the basics of PCA, sample size requirement, data standardization, and interpretation of the PCA results
Volcano plot in Python
Volcano plot using bioinfokit package. This article explains the visualization of volcano plots for gene expression data
Multiple hypothesis testing problem in Bioinformatics
Multiple hypothesis testing and corrections, type I and II errors, false discovery rate, Bonferroni correction, and Benjamini/Hochberg correction
Bioinformatics file readers and processing (FASTA, FASTQ, and VCF)
Biological data handling and processing using Python codes
Manhattan plot in Python
Introduction, analysis, and visualization of Manhattan plot in Python
MA plot to visualize gene expression data using Python
MA plot basics, analysis, and visualization
